PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG434400.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 351aa    MW: 37195.2 Da    PI: 8.4011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG434400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-1496147155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Pavir.1NG434400.2.p  96 QRMTHIAVERNRRRQMNEYLAVLRSLMPEP---YVQRGDQASIVGGAIEFVKELE 147
                          79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1787160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-1494151No hitNo description
PROSITE profilePS5088815.30195146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-1496160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1196147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSALVDALCA PTGDAAALIY DTFNAASFLF DGPAAAALYD GAGIVECPPP AQQQQQQQAA  60
EAAGETQAAT SSAPTRVRKR RRRARSCKSR EETETQRMTH IAVERNRRRQ MNEYLAVLRS  120
LMPEPYVQRG DQASIVGGAI EFVKELEQQL QCLEAQKRKL LVHQHKAAKP DATPMHHSAS  180
SSSTKAPAGT TACVETAAAT AVAATTSNCS SSVTEDAADH APPPPFAQFF TYPQYVWCHS  240
PRDPASSAAA AAAEDGGGRP GVADIEVTLV ETHASLRVMT PRRPGQLLGL VAGLQALRLG  300
VLHLSVTTLE SLVLYSISVK VPRGVRALAA RCFPITFSLL KVSPPSSPAF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781RKRRR
27784RKRRRRAR
396107RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.158900.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350321e-114BT035032.1 Zea mays full-length cDNA clone ZM_BFb0033F17 mRNA, complete cds.
GenBankBT0386551e-114BT038655.1 Zea mays full-length cDNA clone ZM_BFb0304G04 mRNA, complete cds.
GenBankKJ7268891e-114KJ726889.1 Zea mays clone pUT3432 bHLH transcription factor (bHLH53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953510.11e-165PREDICTED: transcription factor bHLH94
TrEMBLC5Y0S01e-132C5Y0S0_SORBI; Putative uncharacterized protein Sb04g031250
STRINGSb04g031250.11e-131(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.14e-26bHLH family protein